QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. The methods have been largely described in the dissertation of P.M. Bourke in 2018 .


Reference manual

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0.0.5 by Peter Bourke, a month ago

Browse source code at https://github.com/cran/polyqtlR

Authors: Peter Bourke [aut, cre] , Christine Hackett [aut] , Chris Maliepaard [ctb] , Geert van Geest [aut] , Roeland Voorrips [ctb] , Johan Willemsen [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports abind, doParallel, foreach, Hmisc, knitr, nlme, RColorBrewer, Rcpp, reshape2

Suggests igraph, mappoly, polymapR, rmarkdown

Linking to Rcpp, RcppArmadillo

System requirements: C++11

See at CRAN