QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Quantitative trait loci (QTL) analysis in polyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. The methods have been largely described in the dissertation of P.M. Bourke in 2018 .


Reference manual

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0.0.4 by Peter Bourke, a month ago

Browse source code at https://github.com/cran/polyqtlR

Authors: Peter Bourke [aut, cre] , Christine Hackett [aut] , Chris Maliepaard [ctb] , Geert van Geest [aut] , Roeland Voorrips [ctb] , Johan Willemsen [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports abind, doParallel, foreach, Hmisc, knitr, nlme, RColorBrewer, Rcpp, reshape2, rmarkdown

Suggests polymapR, mappoly

Linking to Rcpp, RcppArmadillo

System requirements: C++11

See at CRAN