QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. For more background and to reference the package see .


Reference manual

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0.0.7 by Peter Bourke, a month ago

Browse source code at https://github.com/cran/polyqtlR

Authors: Peter Bourke [aut, cre] , Christine Hackett [ctb] , Chris Maliepaard [ctb] , Geert van Geest [ctb] , Roeland Voorrips [ctb] , Johan Willemsen [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports abind, doParallel, foreach, Hmisc, knitr, nlme, RColorBrewer, Rcpp, reshape2

Suggests igraph, mappoly, polymapR, rmarkdown

Linking to Rcpp, RcppArmadillo

System requirements: C++11

See at CRAN