Optimal Block Designs for Two-Colour cDNA Microarray Experiments

Computes A-, MV-, D- and E-optimal or near-optimal block designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all possible elementary treatment contrasts. The algorithms used in this package are based on the treatment exchange and array exchange algorithms of Debusho, Gemechu and Haines (2018) . The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.


Reference manual

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install.packages("optbdmaeAT")

1.0.2 by Dibaba Bayisa Gemechu, a year ago


Browse source code at https://github.com/cran/optbdmaeAT


Authors: Dibaba Bayisa Gemechu [aut, cre] , Legesse Kassa Debusho [aut] , Linda Haines [aut]


Documentation:   PDF Manual  


GPL-2 license


Depends on MASS, Matrix, igraph, tcltk


See at CRAN