Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) .


Reference manual

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2.7 by Jeremy Beaulieu, 5 months ago

Browse source code at https://github.com/cran/corHMM

Authors: Jeremy Beaulieu [aut, cre] , Brian O'Meara [aut] , Jeffrey Oliver [aut] , James Boyko [aut]

Documentation:   PDF Manual  

Task views:

GPL (>= 2) license

Imports expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools

Depends on ape, nloptr, GenSA

Suggests testthat, knitr, rmarkdown

See at CRAN