Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) .
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2.7 by Jeremy Beaulieu, 5 months ago
Browse source code at https://github.com/cran/corHMM
Authors: Jeremy Beaulieu [aut, cre] , Brian O'Meara [aut] , Jeffrey Oliver [aut] , James Boyko [aut]
Documentation: PDF Manual
Task views:
GPL (>= 2) license
Imports expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools
Depends on ape, nloptr, GenSA
Suggests testthat, knitr, rmarkdown
See at CRAN