Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) .


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("corHMM")

2.4 by Jeremy Beaulieu, a month ago


Browse source code at https://github.com/cran/corHMM


Authors: Jeremy Beaulieu [aut, cre] , Brian O'Meara [aut] , Jeffrey Oliver [aut] , James Boyko [aut]


Documentation:   PDF Manual  


Task views:


GPL (>= 2) license


Imports expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools

Depends on ape, nloptr, GenSA

Suggests testthat, knitr, rmarkdown


See at CRAN