Disease-Drived Differential Proteins Co-Expression Network Analysis

Functions designed to connect disease-related differential proteins and co-expression network. It provides the basic statics analysis included t test, ANOVA analysis. The network construction is not offered by the package, you can used 'WGCNA' package which you can learn in Peter et al. (2008) . It also provides module analysis included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and hub analysis.


Reference manual

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0.3.0 by Kefu Liu, 6 months ago


Report a bug at https://github.com/liukf10/DDPNA/issues

Browse source code at https://github.com/cran/DDPNA

Authors: Kefu Liu [aut, cre]

Documentation:   PDF Manual  

GPL-2 license

Imports stats, ggplot2, ggalt, MEGENA, igraph, Hmisc, utils, grDevices, plyr, scales, grid, VennDiagram

Suggests WGCNA, Biostrings, impute, ggfortify

See at CRAN