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2.12.1 by Klaus Schliep, 3 months ago

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https://github.com/KlausVigo/phangorn, https://klausvigo.github.io/phangorn/

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Report a bug at https://github.com/KlausVigo/phangorn/issues

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Browse source code at https://github.com/cran/phangorn

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Authors: Klaus Schliep [aut, cre] , Emmanuel Paradis [aut] , Leonardo de Oliveira Martins [aut] , Alastair Potts [aut] , Iris Bardel-Kahr [aut] , Tim W. White [ctb] , Cyrill Stachniss [ctb] , Michelle Kendall [ctb] , Keren Halabi [ctb] , Richel Bilderbeek [ctb] , Kristin Winchell [ctb] , Liam Revell [ctb] , Mike Gilchrist [ctb] , Jeremy Beaulieu [ctb] , Brian O'Meara [ctb] , Long Qu [ctb] , Joseph Brown [ctb] , Santiago Claramunt [ctb]

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Documentation:   PDF Manual  

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GPL (>= 2) license

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Imports digest, fastmatch, generics, graphics, grDevices, igraph, Matrix, methods, parallel, quadprog, Rcpp, stats, utils

Depends on ape

Suggests apex, Biostrings, ggseqlogo, ggplot2, knitr, magick, rgl, rmarkdown, seqinr, testthat, tinytest, vdiffr, xtable

Linking to Rcpp

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Imported by BSS, BoSSA, DCLEAR, EnvNJ, LDM, MonoPhy, OUwie, POMS, STraTUS, SeqFeatR, TML, babette, beastier, coalescentMCMC, corHMM, dispRity, dowser, genBaRcode, haplotypes, hisse, immunarch, indelmiss, ips, markophylo, microbial, nodeSub, orthGS, paleotree, pcmabc, phyloregion, phytools, ppgm, rapidphylo, recluster, rwty, scistreer, sketching, treespace.

Depended on by MSCquartets, apex, windex.

Suggested by CongreveLamsdell2016, MiscMetabar, Platypus, Quartet, RRphylo, RevGadgets, TreeDist, TreeSearch, TreeTools, ape, gromovlab, mcbette, shipunov, tracerer.

Enhanced by dendextend.

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See at CRAN