Reference manual

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install.packages("phangorn")

2.8.1 by Klaus Schliep, 5 months ago


https://github.com/KlausVigo/phangorn


Report a bug at https://github.com/KlausVigo/phangorn/issues


Browse source code at https://github.com/cran/phangorn


Authors: Klaus Schliep [aut, cre] , Emmanuel Paradis [aut] , Leonardo de Oliveira Martins [aut] , Alastair Potts [aut] , Tim W. White [aut] , Cyrill Stachniss [ctb] , Michelle Kendall [ctb] , Keren Halabi [ctb] , Richel Bilderbeek [ctb] , Kristin Winchell [ctb] , Liam Revell [ctb] , Mike Gilchrist [ctb] , Jeremy Beaulieu [ctb] , Brian O'Meara [ctb] , Long Qu [ctb]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports fastmatch, graphics, grDevices, igraph, Matrix, methods, parallel, quadprog, Rcpp, stats, utils

Depends on ape

Suggests Biostrings, knitr, magick, prettydoc, rgl, rmarkdown, seqinr, seqLogo, tinytest, xtable

Linking to Rcpp


Imported by BSS, BoSSA, CommT, DCLEAR, EnvNJ, OUwie, STraTUS, SeqFeatR, TreeDist, babette, beastier, coalescentMCMC, corHMM, dispRity, dowser, genBaRcode, haplotypes, hisse, immunarch, indelmiss, ips, liayson, markophylo, microbial, nodeSub, paleotree, pcmabc, phyloregion, phytools, prewas, recluster, rwty, taxize, timetree, treespace.

Depended on by MSCquartets, MonoPhy, apex, windex.

Suggested by CongreveLamsdell2016, Quartet, RRphylo, TreeSearch, TreeTools, ape, gromovlab, pagoo, shipunov, tracerer.


See at CRAN