Poisson Lognormal Models

The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin, 2021 ) can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data, discriminant analysis, model-based clustering and network inference. Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("PLNmodels")

1.3.2 by Julien Chiquet, 24 days ago


https://pln-team.github.io/PLNmodels/


Report a bug at https://github.com/pln-team/PLNmodels/issues


Browse source code at https://github.com/cran/PLNmodels


Authors: Julien Chiquet [aut, cre] (ORCID: , Mahendra Mariadassou [aut] (ORCID: , Stéphane Robin [aut] , François Gindraud [ctb] , Julie Aubert [ctb] , Bastien Batardière [ctb] , Giovanni Poggiato [ctb] , Cole Trapnell [ctb] , Maddy Duran [ctb] , Ryan Friedman [ctb]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports cli, corrplot, dplyr, ggplot2, grDevices, grid, gridExtra, igraph, magrittr, MASS, Matrix, methods, nloptr, parallel, purrr, R6, Rcpp, rlang, stats, tidyr, torch

Suggests factoextra, glassoFast, knitr, pheatmap, rmarkdown, spelling, quarto, testthat

Linking to nloptr, Rcpp, RcppArmadillo


See at CRAN