R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. The challenge paper is Gong et al. (2021) .
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1.0.8 by Il-Youp Kwak, 2 months ago
https://github.com/ikwak2/DCLEAR
Browse source code at https://github.com/cran/DCLEAR
Authors: Il-Youp Kwak [aut, cre] , Wuming Gong [aut]
Documentation: PDF Manual
GPL-3 license
Imports BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, tidyverse, rBayesianOptimization, rlang, BiocGenerics
Suggests knitr, rmarkdown, markdown
Linking to Rcpp, RcppArmadillo
See at CRAN