R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. The challenge paper is Wuming et al. (2021) .
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Il-Youp Kwak, 18 days ago
Browse source code at
Il-Youp Kwak [aut, cre]
Wuming Gong [aut]
Imports BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, tidyverse, rBayesianOptimization, rlang
Suggests knitr, rmarkdown, markdown
Linking to Rcpp, RcppArmadillo
See at CRAN