Distance Based Cell Lineage Reconstruction

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. The challenge paper is Gong et al. (2021) .


Reference manual

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1.0.8 by Il-Youp Kwak, 2 months ago


Browse source code at https://github.com/cran/DCLEAR

Authors: Il-Youp Kwak [aut, cre] , Wuming Gong [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, tidyverse, rBayesianOptimization, rlang, BiocGenerics

Suggests knitr, rmarkdown, markdown

Linking to Rcpp, RcppArmadillo

See at CRAN