R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. The challenge paper is Gong et al. (2021) .
It appears you don't have a PDF plugin for this browser. You can
click here to download the reference manual.
Il-Youp Kwak, 2 months ago
Browse source code at
Il-Youp Kwak [aut, cre]
Wuming Gong [aut]
Imports BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, tidyverse, rBayesianOptimization, rlang, BiocGenerics
Suggests knitr, rmarkdown, markdown
Linking to Rcpp, RcppArmadillo
See at CRAN