Partition-Assisted Clustering and Multiple Alignments of Networks

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) for detail method description.


Reference manual

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1.1.4 by Ye Henry Li, 9 months ago

Browse source code at

Authors: Ye Henry Li , Dangna Li

Documentation:   PDF Manual  

GPL-3 license

Imports Rcpp, igraph, parmigene, infotheo, dplyr, Rtsne, ggplot2, ggrepel

Suggests knitr, rmarkdown

Linking to Rcpp

System requirements: C++11

See at CRAN