Reference manual

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install.packages("survival")

3.6-4 by Terry M Therneau, a month ago


https://github.com/therneau/survival


Browse source code at https://github.com/cran/survival


Authors: Terry M Therneau [aut, cre] , Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009) , Atkinson Elizabeth [ctb] , Crowson Cynthia [ctb]


Documentation:   PDF Manual  


LGPL (>= 2) license


Imports graphics, Matrix, methods, splines, stats, utils


Imported by ABSurvTDC, AICcmodavg, ActFrag, AutoScore, BGPhazard, BNPdensity, BSGW, Ball, BayesCTDesign, BayesFBHborrow, BayesSurvival, BayesSurvive, BeSS, BioPETsurv, BivRec, CFC, CFO, CIEE, CP, CPsurv, CSCNet, CalibrationCurves, Cascade, CaseBasedReasoning, CatPredi, CauchyCP, CeRNASeek, CenBAR, CoRpower, CohortSurvival, CondiS, CopulaCenR, Counterfactual, CoxAIPW, CoxBcv, Coxmos, CsChange, CureAuxSP, CureDepCens, CutpointsOEHR, Cyclops, DCEmgmt, DWreg, DepCens, DynForest, EGRET, EL2Surv, ELYP, Epi, EpiForsk, EventPredInCure, FHtest, FLORAL, FastJM, GAGAs, GEInter, GFDsurv, GJRM, GPSCDF, GSSTDA, GTDL, GWASinlps, GenEst, GofCens, HCTDesign, HDJM, HIMA, HazardDiff, ICSKAT, ICcalib, ICcforest, IDMIR, IrregLong, JLPM, JointAI, JointFPM, KONPsurv, LTRCforests, LTRCtrees, Landmarking, MAGNAMWAR, MCPModBC, MFSIS, MMAD, MTLR, MXM, MachineShop, Mediana, MetabolicSurv, MiMIR, MiRKAT, MicrobiomeSurv, My.stepwise, NADA2, NNMIS, NPHazardRate, ODS, OSTE, OneArm2stage, OneArmTTE, OneSampleLogRankTest, OptimalTiming, PAmeasures, PBIR, PCLassoReg, PDN, PMAPscore, PScr, PTE, PTERP, PWEALL, Phase123, ProSGPV, ProgModule, Publish, QTOCen, Qindex, QoLMiss, R2Addhaz, RABR, RItools, ROlogit, RcmdrPlugin.KMggplot2, ReIns, RoBSA, RobinCar, Rsurrogate, SAME, SCCS, SCORNET, SEERaBomb, SIDES, SIGN, SIS, SMDIC, SMPracticals, SNPassoc, SSRMST, SUMMER, SemiPar.depCens, SimHaz, StepReg, StratifiedMedicine, SuRF.vs, SubgrpID, Sunclarco, Surrogate, SurrogateOutcome, SurrogateTest, SurvCorr, SurvDisc, SurvHiDim, SurvMI, SurvMetrics, SurvivalClusteringTree, SvyNom, TOmicsVis, TSDT, ThomasJeffersonUniv, ThresholdROCsurvival, TidyDensity, TimeVTree, TraMineRextras, TreatmentSelection, TwoPhaseInd, TwoStepCLogit, VBJM, VSOLassoBag, VarReg, WCE, WGCNA, WINS, WLreg, WR, WRTDStidal, Wcompo, YPmodelPhreg, addhazard, adjSURVCI, adjustedCurves, aftR2, aftgee, afthd, afttest, allMT, allestimates, amt, ascii, autoReg, bamlss, base.rms, basecamb, bayesCT, baytrends, beanz, bestridge, bigSurvSGD, binequality, biospear, blockForest, boot.pval, bossR, bujar, burgle, c060, calibmsm, cancerGI, carSurv, card, casebase, causalCmprsk, ccostr, cenROC, censCov, cforward, cg, chest, chngpt, ciTools, clespr, clintools, cmprskQR, cmprskcoxmsm, coda4microbiome, cohorttools, compareGroups, condSURV, controlTest, cotram, coxphf, coxrobust, coxrt, csmpv, cutoff, cvwrapr, cyclomort, dcurves, debest, deeptrafo, dipm, dirttee, diversityForest, drcSeedGerm, drcte, drgee, drugDemand, dynsurv, ePCR, ecpc, eha, em, ems, eoa3, epade, epiomics, epitab, epoc, etm, etree, eventPred, eventglm, extrafrail, ezcox, familiar, fastcmprsk, fic, figuRes2, finalfit, forsearch, gamlss, gbm, gestate, gfoRmula, ggRandomForests, ggparty, ggplot2.utils, ggquickeda, ggrisk, ggscidca, ggsurvfit, glm.predict, glmmPen, glmnet, glmnetr, graphPAF, gravity, greport, gsDesign2, gsMAMS, hdnom, hds, hesim, highMLR, horseshoenlm, hrcomprisk, idem, imsig, incubate, interactionRCS, ipred, ipw, ipwCoxCSV, ivtools, jmBIG, jomo, jskm, jsmodule, jstable, km.ci, kmi, landest, landmulti, landpred, lava, lcmm, lilikoi, lillies, lodGWAS, longROC, longitudinalcascade, mMARCH.AC, mable, maczic, markovMSM, maxcombo, mboost, mccmeiv, meerva, merlin, metaSurvival, mets, mfp2, mhazard, miCoPTCM, miWQS, miceafter, microsimulation, mixPHM, mixtools, mlma, mlr, mlt, mlt.docreg, modeLLtest, model4you, mombf, moonBook, mpr, mratios, msaenet, msm, msmtools, muhaz, multinma, multisite.accuracy, multiview, nnt, nparsurv, nph, nphPower, nphRCT, nsROC, numKM, obliqueRSF, orthoDr, oscar, otrKM, packDAMipd, palasso, pammtools, party, partykit, pathwayTMB, pbatR, pda, pec, penalizedclr, pencal, permimp, personalized, phers, plasma, pldamixture, plgraphics, plsRcox, plsmselect, pmcalibration, polle, popEpi, postGGIR, powerSurvEpi, pre, precmed, predRupdate, prioritylasso, prodlim, psBayesborrow, psbcSpeedUp, psborrow, pseval, psfmi, psm3mkv, pubh, qgcomp, qgcompint, qris, quantreg, quickReg, randomGLM, rankhazard, rcssci, reReg, reconstructKM, recurrentpseudo, regmedint, regplot, regport, remiod, remss, reportRmd, rigr, riskRegression, rms, rmsb, rmstcompsens, rocTree, rolr, rpsftm, rstanarm, sGBJ, sMSROC, safestats, scRNAtools, semicmprskcoxmsm, sglg, shinyCox, shrink, sievePH, signatureSurvival, sim.BA, simIDM, simPH, simexaft, simtrial, skpr, smcfcs, smdi, sp23design, spBayesSurv, spatsurv, spef, squant, ssMutPA, starnet, stdReg, stpm, stratamatch, success, superpc, surrosurv, surv2sampleComp, survAUC, survAWKMT2, survCurve, survELtest, survParamSim, survRM2adapt, survRM2perm, survSens, survex, survidm, survival.svb, survival666, survivalAnalysis, survivalMPLdc, survivalREC, survminer, survobj, survout, synthpop, tLagPropOdds, tableeasy, targeted, tauProcess, tdROC, tern, tfCox, tidyCDISC, tidycmprsk, tornado, trajmsm, tram, tramicp, tranSurv, transmdl, truncAIPW, tsriadditive, vaccine, valorate, visR, vpc, wcox, xlink, xpose4.

Depended on by AER, AF, APtools, BART, BMA, BRACE, BayesMixSurv, BayesianMediationA, BeQut, CPE, CaseCohortCoxSurvival, ComparisonSurv, Copula.Markov.survival, CoxR2, DCEtool, DOVE, DTAT, EquiSurv, EstimationTools, EvidenceSynthesis, FamEvent, FlexVarJM, GORCure, GSED, HCmodelSets, ICGOR, IDPSurvival, IPCWK, IPDfromKM, InferenceSMR, InformativeCensoring, JM, JMH, JMbayes, JMbayes2, JSM, KMunicate, LogicReg, LongCART, MST, MapGAM, ModTools, NADA, NPHMC, NSM3, OTRselect, Oncofilterfast, OrdFacReg, PHInfiniteEstimates, PHeval, PICBayes, PRIMEplus, PWEXP, PenCoxFrail, PwrGSD, Qest, RISCA, RcmdrPlugin.BWS1, RcmdrPlugin.BWS2, RcmdrPlugin.BWS3, RcmdrPlugin.DCE, RcmdrPlugin.survival, RelDists, RobustAFT, SIMMS, SPREDA, STAND, SemiCompRisks, SimNPH, SurvEval, SurvRegCensCov, SurvTrunc, TH.data, TransModel, TwoArmSurvSim, VAJointSurv, VEwaning, VEwaningVariant, YPBP, YPPE, ahMLE, ahaz, aisoph, bayesDP, bayesSurv, bcfrailph, bcfrailphdv, bhm, biostat3, blapsr, bpcp, bshazard, carcass, cchs, censored, cmprsk, coin, compound.Cox, cond, contTimeCausal, coxed, coxme, coxphSGD, coxphw, crrSC, crrcbcv, csampling, ctqr, cuRe, curephEM, currentSurvival, discfrail, distcomp, dnn, dtrSurv, dynpred, ebmstate, epiDisplay, epiR, eventTrack, factorial2x2, fitdistrplus, flexrsurv, flexsurv, flexsurvcure, frailtyEM, frailtyHL, frailtyMMpen, frailtySurv, frequentistSSD, gamlss.cens, gcerisk, geecure, glmpath, gmvjoint, gte, haplo.ccs, hdbma, iBST, icenReg, icensBKL, interval, invGauss, ipcwswitch, ipflasso, isoSurv, jlctree, joineR, joineRML, joint.Cox, kin.cohort, linERR, lpl, luca, mRMRe, marg, mexhaz, mfp, miRecSurv, missDeaths, mixcure, mma, mmabig, mmc, mstate, multcomp, multipleNCC, multiridge, netcox, nftbart, nlreg, nltm, nricens, oceCens, ordinalgmifs, p3state.msm, packHV, pamr, parfm, partDSA, pch, penPHcure, penalized, peperr, permGS, plac, psbcGroup, qrcm, qrcmNP, randomizeR, relsurv, risksetROC, rprev, rstpm2, season, seawaveQ, selectiveInference, seqDesign, simMSM, smcure, smoothHR, smoothSurv, sox, speff2trial, spsurv, ssym, stepp, surrosurvROC, survAH, survBootOutliers, survC1, survIDINRI, survMisc, survRM2, survSNP, survcompare, survexp.fr, survey, survivalMPL, survivalSL, survivalVignettes, survivalsvm, survstan, tLagInterim, threg, thregI, timereg, tnet, uni.survival.tree, uniah, vsd, xhaz.

Suggested by ARTool, BB, BCClong, BFpack, Boruta, BrokenAdaptiveRidge, BuyseTest, CALIBERrfimpute, CTNote, DAAG, DanielBiostatistics10th, EmpiricalCalibration, FRESA.CAD, FastKM, GGally, Greg, HSAUR, HSAUR2, HSAUR3, Hmisc, INLAjoint, ISwR, LDM, MASS, MCPModGeneral, MatchIt, MuMIn, PINSPlus, PResiduals, PlackettLuce, R2HTML, RESI, RLT, RVAideMemoire, SSLR, SurvivalTests, UCSCXenaShiny, Umpire, VirtualPop, WeightIt, WinRatio, agridat, ahw, aorsf, aplore3, arsenal, atable, bayesplot, biglasso, bnnSurvival, boot, broom, broom.helpers, butcher, car, cequre, choplump, clinfun, cloneRate, confSAM, contsurvplot, copcor, coreSim, crosstable, dawai, depigner, desctable, discSurv, dlnm, doBy, dtrackr, edecob, exactRankTests, extremefit, fairml, fastAFT, flexmix, fluoSurv, forestmodel, forplo, fwb, gamair, gamboostLSS, gamlss.inf, gap, genSurv, ggeffects, ggformula, ggfortify, ggpolar, ggstats, ggstatsplot, glmglrt, glmulti, grImport, grf, grpreg, gtsummary, h2o, hal9001, heemod, highcharter, homomorpheR, iNZightRegression, icrf, injurytools, insight, irboost, kdry, kernhaz, kmc, kyotil, lavaSearch2, lmtest, lrstat, lss2, marginaleffects, marginalizedRisk, maxstat, mc2d, mediation, metafor, mgcv, mi, mice, mitml, mlr3filters, mlsurvlrnrs, modelsummary, momentuHMM, mxfda, ncvreg, netdiffuseR, nlive, nncc, npsm, opera, optband, outreg, pander, parameters, parmsurvfit, parsnip, pder, pensim, performance, ph2bye, ph2mult, phyloregion, pillar, pmartR, pmml, pmxpartab, psborrow2, purge, qwraps2, randomForestSRC, ranger, rattle, recodeflow, relevance, report, reporttools, ricu, rineq, rmdl, rpart, rsimsum, rsmatch, rtables, saemix, sandwich, sharp, shinyPredict, simex, simstudy, simsurv, sirus, smof, smoothROCtime, sparseR, srvyr, statsExpressions, subscreen, support.BWS, support.BWS2, support.BWS3, support.CEs, survivalmodels, tab, tableone, tbm, texmex, tfrmt, tidytidbits, timeROC, tramME, tramnet, tramvs, treeshap, trtf, truncreg, tuneRanger, utile.tables, utile.tools, utile.visuals, visreg, wally, xtable, yardstick, zlog, ztable.

Enhanced by denstrip, emmeans, papeR, qvcalc, stargazer, texreg.


See at CRAN