Genomic Random Interval (GRIN)

Implements the Genomic Random Interval (GRIN) framework for identifying genomic loci affected by genomic lesions more frequently than expected by chance. Supports multiple lesion classes, lesion constellation analysis, exon-level target-size modeling, genomic lesion visualization, and gene-level association analyses linking genomic lesions or gene expression with binary and time-to-event clinical outcomes. Includes tools for retrieving versioned GRCh38 Ensembl gene, exon, and regulatory-element annotations. The statistical framework is described in Pounds et al. (2013) .


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("GRIN2")

2.1.0 by Abdelrahman Elsayed, 2 months ago


https://github.com/abdel-elsayed87/GRIN2


Report a bug at https://github.com/abdel-elsayed87/GRIN2/issues


Browse source code at https://github.com/cran/GRIN2


Authors: Abdelrahman Elsayed [aut, cre, cph] (ORCID: , Xueyuan Cao [aut] , Lakshmi Anuhya Patibandla [aut] , Stanley Pounds [aut, cph]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports circlize, data.table, dplyr, forcats, ggplot2, graphics, grDevices, grid, magrittr, stats, survival, tibble, tools, utils, writexl

Suggests AnnotationHub, biomaRt, ComplexHeatmap, ensembldb, GenomeInfoDb, GenomicRanges, gridExtra, gridGraphics, Gviz, IRanges, knitr, rmarkdown, S4Vectors


See at CRAN