Partial Least Squares Regression for Cox Models and Related Techniques

Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings , Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in , Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.


News

plsRcox 1.7.4

  • Created website for the package.
  • Added a NEWS.md file to track changes to the package.

plsRcox 1.7.3

  • Encoding is now UTF-8

plsRcox 1.7.2

  • Updated to pass new CRAN checks

plsRcox 1.7.1

  • Retrieve Lars Model on residuals in LarsDR

plsRcox 1.7.0

  • Prediction accuracy indicators

plsRcox 1.6.0

  • Goodness of fit indicators

plsRcox 1.5.0

  • Cross validation functions for coxsplsDR and DKcoxsplsDR models

plsRcox 1.4.0

  • Cross validation functions for coxpls, coxplsDR and DKcoxplsDR models

plsRcox 1.3.0

  • Cross validation functions for larsDR models

plsRcox 1.2.0

  • Cross validation functions for plsRcox models

plsRcox 1.1.0

  • DKplsRcox function

plsRcox 1.0.1

  • Fix for predict method for plsRcoxmodel objects

plsRcox 1.0.0

  • User2014! version

plsRcox 0.9.9

  • Code enhancement for big datasets

plsRcox 0.9.0

  • New wrappers for (s)pls-based functions

plsRcox 0.8.0

  • Multivariate method choice for pls based algorithms

plsRcox 0.7.6

  • Minor fixes

plsRcox 0.7.5

  • Implemented (direct kernel) plscox

plsRcox 0.7.0

  • Predict function for plscox

plsRcox 0.6.0

  • Implemented plscox PLS

plsRcox 0.5.0

  • Support for (direct kernel) sparse PLS

plsRcox 0.4.0

  • Support for direct kernel PLS

plsRcox 0.3.0

  • Code enhancement

plsRcox 0.2.0

  • Code enhancement

plsRcox 0.1.1

  • Code enhancement

plsRcox 0.1.0

  • Man updates

plsRcox 0.0.1

  • Package creation

Reference manual

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install.packages("plsRcox")

1.7.6 by Frederic Bertrand, 8 months ago


http://fbertran.github.io/plsRcox/, https://github.com/fbertran/plsRcox/


Report a bug at https://github.com/fbertran/plsRcox/issues/


Browse source code at https://github.com/cran/plsRcox


Authors: Frederic Bertrand [cre, aut] , Myriam Maumy-Bertrand [aut]


Documentation:   PDF Manual  


Task views: Survival Analysis


GPL-3 license


Imports survival, plsRglm, lars, pls, kernlab, mixOmics, risksetROC, survcomp, survAUC, rms

Suggests survivalROC, plsdof


Imported by biospear.


See at CRAN