Plotting for Bayesian Models

Plotting functions for posterior analysis, model checking, and MCMC diagnostics. The package is designed not only to provide convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling, particularly (but not exclusively) packages interfacing with Stan.


News

bayesplot 1.1.0

(GitHub issue/PR numbers in parentheses)

  • Images in vignettes should now render properly using png device. Thanks to TJ Mahr. (#51)
  • xaxis_title(FALSE) and yaxis_title(FALSE) now set axis titles to NULL rather than changing theme elements to element_blank(). This makes it easier to add axis titles to plots that don’t have them by default. Thanks to Bill Harris. (#53)
  • Introduce ppc_error_hist_grouped for plotting predictive errors by level of a grouping variable. (#40)
  • Introduce mcmc_recover_intervals for comparing MCMC estimates to "true" parameter values used to simulate the data. (#56)
  • Add argument divergences to mcmc_trace function. For models fit using HMC/NUTS this can be used to display divergences as a rug at the bottom of the trace plot. (#42)
  • Introduce bayesplot_grid function for juxtaposing plots and enforcing shared axis limits. (#59)
  • The stat argument for all ppc_stat_* functions now accepts a function instead of only the name of a function. (#31)

bayesplot 1.0.0

  • Initial CRAN release

Reference manual

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install.packages("bayesplot")

1.2.0 by Jonah Gabry, 3 months ago


http://mc-stan.org/, https://groups.google.com/forum/#!forum/stan-users


Report a bug at https://github.com/stan-dev/bayesplot/issues/


Browse source code at https://github.com/cran/bayesplot


Authors: Jonah Gabry [aut, cre], Paul-Christian Buerkner [ctb]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports dplyr, ggplot2, reshape2, stats, utils

Suggests arm, gridExtra, knitr, loo, rmarkdown, rstan, rstanarm, rstantools, scales, shinystan, testthat


Imported by brms, nauf, revdbayes, rstanarm, shinystan.

Suggested by CopulaDTA, bssm, greta, rstan, rstantools.


See at CRAN