Genetic Analysis Package

It is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates.


Reference manual

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1.2.2 by Jing Hua Zhao, a year ago

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Browse source code at

Authors: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and Brian Ripley

Documentation:   PDF Manual  

Task views: Statistical Genetics, Meta-Analysis

GPL (>= 2) license

Suggests BradleyTerry2, MASS, Matrix, MCMCglmm, R2jags, bdsmatrix, calibrate, circlize, coda, coxme, dplyr, foreign, forestplot, gap.datasets, grid, haplo.stats, kinship2, lattice, magic, matrixStats, meta, mets, nlme, pedigree, pedigreemm, plotrix, qqman, regress, reshape, rmeta, rms, survival

Imported by BayesianTools, DHARMa, PopGenReport, pould.

Suggested by rehh.

See at CRAN