Genetic Analysis Package

It is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates.


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Reference manual

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install.packages("gap")

1.1-22 by Jing Hua Zhao, 8 months ago


https://jinghuazhao.github.io


Browse source code at https://github.com/cran/gap


Authors: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and Brian Ripley


Documentation:   PDF Manual  


Task views: Statistical Genetics, Meta-Analysis


GPL (>= 2) license


Suggests BradleyTerry2, MASS, Matrix, MCMCglmm, R2jags, bdsmatrix, coda, coxme, foreign, grid, haplo.stats, kinship2, lattice, magic, mets, nlme, pedigree, pedigreemm, regress, rms, survival


Imported by BayesianTools, DHARMa, PopGenReport.


See at CRAN