Rank Preserving Structural Failure Time Models

Implements methods described by the paper Robins and Tsiatis (1991) . These use g-estimation to estimate the causal effect of a treatment in a two-armed randomised control trial where non-compliance exists and is measured, under an assumption of an accelerated failure time model and no unmeasured confounders.


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This is an R package that implements the method of Rank Preserving Structural Failure Time models to estimate causal effects in failure time models in randomised control trials where participants do not comply with the treatment assigned.

As an example:

library(rpsftm)
?immdef
fit <- rpsftm(Surv(progyrs, prog)~rand(imm,1-xoyrs/progyrs), data = immdef, censor_time = censyrs)
summary(fit)
#>   arm   rx.Min. rx.1st Qu. rx.Median   rx.Mean rx.3rd Qu.   rx.Max.
#> 1   0 0.0000000  0.0000000 0.0000000 0.1574062  0.2547779 0.9770941
#> 2   1 1.0000000  1.0000000 1.0000000 1.0000000  1.0000000 1.0000000
#>         Length Class      Mode   
#> psi        1   -none-     numeric
#> fit       17   survfit    list   
#> CI         2   -none-     numeric
#> Sstar   1000   Surv       numeric
#> rand    2000   rand       numeric
#> ans        5   -none-     list   
#> eval_z     2   data.frame list   
#> n          2   table      numeric
#> obs        2   -none-     numeric
#> exp        2   -none-     numeric
#> var        4   -none-     numeric
#> chisq      1   -none-     numeric
#> pvalue     1   -none-     numeric
#> call       4   -none-     call   
#> formula    3   terms      call   
#> terms      3   terms      call   
#> 
#> psi: -0.1813226
#> exp(psi): 0.8341662
#> Confidence Interval, psi -0.34984 0.002287789
#> Confidence Interval, exp(psi)  0.7048008 1.00229
plot(fit)

The main function is rpsftm which returns an object that has print, summary, and plot S3 methods.

See the vignette rpsftm_vignette for further details, explanation and examples.

Reference manual

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install.packages("rpsftm")

1.2.9 by Simon Bond, 3 years ago


Browse source code at https://github.com/cran/rpsftm


Authors: Simon Bond [aut, cre] (primary author of code , secondary author of vignette) , Annabel Allison [aut] (primary author of vignette , secondary author of code)


Documentation:   PDF Manual  


GPL-2 license


Imports ggplot2, stats, survival

Suggests knitr, rmarkdown, tableone, testthat


Suggested by FastSurvival.


See at CRAN