Benchmarking and Visualization Toolkit for Penalized Cox Models

Creates nomogram visualizations for penalized Cox regression models, with the support of reproducible survival model building, validation, calibration, and comparison for high-dimensional data.


hdnom

R-CMD-check CRANVersion Downloads from the RStudio CRANmirror

hdnom creates nomogram visualizations for penalized Cox regression models, with the support of reproducible survival model building, validation, calibration, and comparison for high-dimensional data.

Installation

You can install hdnom from CRAN:

install.packages("hdnom")

Or try the development version on GitHub:

remotes::install_github("nanxstats/hdnom")

Browse the vignettes to get started.

Gallery

Nomogram

Kaplan-Meier plot with number at risk table

Model validation and calibration

Model comparison by validation or calibration

Shiny app

Contribute

To contribute to this project, please take a look at the Contributing Guidelines first. Please note that the hdnom project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

Reference manual

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install.packages("hdnom")

6.2.1 by Nan Xiao, 2 months ago


https://nanx.me/hdnom/, https://github.com/nanxstats/hdnom


Report a bug at https://github.com/nanxstats/hdnom/issues


Browse source code at https://github.com/cran/hdnom


Authors: Nan Xiao [aut, cre] , Qing-Song Xu [aut] , Miao-Zhu Li [aut] , Frank Harrell [ctb] (rms author) , Sergej Potapov [ctb] (survAUC author) , Werner Adler [ctb] (survAUC author) , Matthias Schmid [ctb] (survAUC author)


Documentation:   PDF Manual  


GPL (>= 3) license


Imports foreach, ggplot2, glmnet, gridExtra, ncvreg, penalized, survival

Suggests doParallel, knitr, ragg, rmarkdown


Imported by survivalSL.

Depended on by gcomputation.


See at CRAN