MAGNAMWAR

A Pipeline for Meta-Genome Wide Association

Correlates variation within the meta-genome to target species phenotype variations in meta-genome with association studies. Follows the pipeline described in Chaston, J.M. et al. (2014) .

MAGNAMWAR

MAGNAMWAR is used to simplify MGWAS and BGWAS pipelines. It correlates variation within the meta-genome to target species phenotype variations in meta-genome with association studies. For more information and a case study, view the attached vignette.

Reference manual

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install.packages("MAGNAMWAR")

2.0.4 by John Chaston, 8 years ago

Browse source code at https://github.com/cran/MAGNAMWAR

Authors: Corinne Sexton [aut] , John Chaston [aut, cre] , Hayden Smith [ctb]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports ape, coxme, doParallel, dplyr, foreach, iterators, lme4, multcomp, parallel, plyr, qqman, survival, seqinr

Suggests knitr, rmarkdown

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