Implementation of the automatic shift detection method for Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available.
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1.0.1 by Paul Bastide, 2 months ago
https://github.com/pbastide/PhylogeneticEM
Report a bug at https://github.com/pbastide/PhylogeneticEM/issues
Browse source code at https://github.com/cran/PhylogeneticEM
Authors: Paul Bastide [aut, cre], Mahendra Mariadassou [ctb]
Documentation: PDF Manual
GPL (>= 2) | file LICENSE license
Imports capushe, foreach, gglasso, glmnet, graphics, grDevices, LINselect, MASS, methods, plyr, Rcpp, robustbase, stats, utils
Depends on ape, Matrix
Suggests combinat, doParallel, phytools, Rphylopars, testthat, TreeSim, knitr, rmarkdown
Linking to Rcpp, RcppArmadillo
See at CRAN