Inference of transmission tree from a dated phylogeny.
Includes methods to simulate and analyse outbreaks.
The methodology is described in
Didelot et al. (2014) ,
Didelot et al. (2017) .
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Xavier Didelot, a month ago
Browse source code at
Xavier Didelot [aut, cre]
Yuanwei Xu [ctb]
GPL (>= 2)
Imports Rcpp, stats, graphics, ape
Suggests knitr, testthat, purrr, coda, grDevices, lattice, rmarkdown
Linking to Rcpp
System requirements: C++11
See at CRAN