Inference of Transmission Tree from a Dated Phylogeny

Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) , Didelot et al. (2017) .


Reference manual

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1.4.5 by Xavier Didelot, 9 months ago

Browse source code at

Authors: Xavier Didelot [aut, cre] , Yuanwei Xu [ctb]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports Rcpp, stats, graphics, ape

Suggests knitr, testthat, purrr, coda, grDevices, lattice, rmarkdown

Linking to Rcpp

System requirements: C++11

See at CRAN