R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment.


Reference manual

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1.0.2 by Dan Warren, 3 years ago

Browse source code at https://github.com/cran/rwty

Authors: Dan Warren [aut, cre] , Anthony Geneva [aut] , Rob Lanfear [aut] , Luke Harmon [ctb] , April Wright [ctb] , Diego Mallo [ctb] , Klaus Schliep [ctb]

Documentation:   PDF Manual  

GPL-2 license

Imports reshape2, phangorn, coda, viridis, grid, plyr, ggdendro, GGally, parallel

Depends on ape, ggplot2

Suggests knitr, testthat, rmarkdown

See at CRAN