R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment.


Reference manual

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1.0.1 by Dan Warren, 3 years ago

Browse source code at https://github.com/cran/rwty

Authors: Dan Warren <[email protected]> , Anthony Geneva <[email protected]> , Rob Lanfear <[email protected]>

Documentation:   PDF Manual  

GPL-2 license

Imports reshape2, phangorn, coda, viridis, grid, plyr, ggdendro, GGally, parallel

Depends on ape, ggplot2

Suggests knitr

See at CRAN