Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny

Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.


R package to explore monophyly

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Reference manual

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install.packages("MonoPhy")

1.2 by Orlando Schwery, 8 months ago


Browse source code at https://github.com/cran/MonoPhy


Authors: Orlando Schwery


Documentation:   PDF Manual  


GPL-3 license


Depends on ape, phytools, phangorn, RColorBrewer, taxize

Suggests knitr, testthat, spacodiR, rmarkdown


See at CRAN