Explore Monophyly of Taxonomic Groups in a Phylogeny

Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) .

R package to explore monophyly Build Status


Reference manual

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1.3 by Orlando Schwery, a year ago

Browse source code at https://github.com/cran/MonoPhy

Authors: Orlando Schwery [aut, cre] , Brian C. O'Meara [aut, ctb] , Peter Cowman [ctb]

Documentation:   PDF Manual  

GPL-3 license

Depends on ape, phytools, phangorn, RColorBrewer, taxize

Suggests knitr, testthat, paleotree, rmarkdown

See at CRAN