Hierarchical Model of Species Communities

Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling (Tikhonov et al. (2020) ).


Reference manual

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3.0-11 by Otso Ovaskainen, 8 months ago


Report a bug at https://github.com/hmsc-r/HMSC/issues/

Browse source code at https://github.com/cran/Hmsc

Authors: Gleb Tikhonov [aut] , Otso Ovaskainen [aut, cre] , Jari Oksanen [aut] , Melinda de Jonge [aut] , Oystein Opedal [aut] , Tad Dallas [aut]

Documentation:   PDF Manual  

GPL-3 | file LICENSE license

Imports abind, ape, BayesLogit, fields, FNN, ggplot2, MASS, Matrix, matrixStats, MCMCpack, methods, nnet, rlang, parallel, pracma, pROC, sp, statmod, truncnorm

Depends on coda

Suggests R.rsp, testthat, corrplot

See at CRAN