Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling.
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3.0-2 by Otso Ovaskainen, 2 months ago
https://www.helsinki.fi/en/researchgroups/statistical-ecology/hmsc
Report a bug at https://github.com/hmsc-r/HMSC/issues
Browse source code at https://github.com/cran/Hmsc
Authors: Gleb Tikhonov [aut] , Otso Ovaskainen [aut, cre] , Jari Oksanen [aut] , Melinda de Jonge [aut] , Oystein Opedal [aut] , Tad Dallas [aut]
Documentation: PDF Manual
GPL-3 | file LICENSE license
Imports abind, ape, BayesLogit, fields, FNN, ggplot2, MASS, Matrix, MCMCpack, methods, mvtnorm, nnet, parallel, pdist, pROC, phytools, statmod, truncnorm
Depends on coda
Suggests R.rsp, testthat, corrplot
See at CRAN