Hierarchical Model of Species Communities

Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling.


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install.packages("Hmsc")

3.0-2 by Otso Ovaskainen, 2 months ago


https://www.helsinki.fi/en/researchgroups/statistical-ecology/hmsc


Report a bug at https://github.com/hmsc-r/HMSC/issues


Browse source code at https://github.com/cran/Hmsc


Authors: Gleb Tikhonov [aut] , Otso Ovaskainen [aut, cre] , Jari Oksanen [aut] , Melinda de Jonge [aut] , Oystein Opedal [aut] , Tad Dallas [aut]


Documentation:   PDF Manual  


GPL-3 | file LICENSE license


Imports abind, ape, BayesLogit, fields, FNN, ggplot2, MASS, Matrix, MCMCpack, methods, mvtnorm, nnet, parallel, pdist, pROC, phytools, statmod, truncnorm

Depends on coda

Suggests R.rsp, testthat, corrplot


See at CRAN