Adaptive Generalized PCA

Implements adaptive gPCA, as described in: Fukuyama, J. (2017) . The package also includes functionality for applying the method to 'phyloseq' objects so that the method can be easily applied to microbiome data and a 'shiny' app for interactive visualization.


Reference manual

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0.1.2 by Julia Fukuyama, 3 years ago

Browse source code at

Authors: Julia Fukuyama [aut, cre]

Documentation:   PDF Manual  

AGPL-3 license

Imports ape, ggplot2, shiny, phyloseq

Suggests knitr, rmarkdown

Suggested by treeDA.

See at CRAN