Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F.Hansen (2012) . The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from <>.


Reference manual

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2.7.3 by Krzysztof Bartoszek, 2 months ago

Browse source code at

Authors: Krzysztof Bartoszek [cre, aut] , John Clarke [ctb] , Jesualdo Fuentes-Gonzalez [ctb] , Jason Pienaar [ctb]

Documentation:   PDF Manual  

GPL (>= 2) | file LICENCE license

Imports ape, graphics, methods, mvtnorm, Matrix, ouch, PCMBase, stats, TreeSim, matrixcalc

Depends on abind

Suggests PCMBaseCpp, geiger, ggplot2, knitr, rmarkdown, mvMORPH

Imported by pcmabc.

Suggested by GLSME, PCMBase.

See at CRAN