'BEAUti' from R

'BEAST2' (< https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.


Reference manual

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2.6.2 by Richèl J.C. Bilderbeek, 6 months ago

https://docs.ropensci.org/beautier/ (website) https://github.com/ropensci/beautier/

Report a bug at https://github.com/ropensci/beautier

Browse source code at https://github.com/cran/beautier

Authors: Richèl J.C. Bilderbeek [aut, cre] , Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , David Winter [rev] (David reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , Paul Van Els [ctb] , Raphael Scherrer [ctb] , Yacine B. Chehida [ctb] , Katharine S. Walter [ctb] , Gary Napier [ctb] , Jason Griffiths [ctb] , Thijs Janzen [ctb] , Jana Riederer [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports ape, assertive, pryr, rappdirs, seqinr, stringr, testit

Suggests spelling, devtools, knitr, ggplot2, hunspell, lintr, markdown, readr, rmarkdown, testthat

Imported by beastier, nodeSub.

Depended on by babette.

Suggested by mauricer.

See at CRAN