'BEAUti' from R

'BEAST2' (< http://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.


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Reference manual

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install.packages("beautier")

2.2.1 by Richèl J.C. Bilderbeek, 4 months ago


https://github.com/ropensci/beautier


Report a bug at https://github.com/ropensci/beautier/issues


Browse source code at https://github.com/cran/beautier


Authors: Richèl J.C. Bilderbeek [aut, cre] , Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , David Winter [rev] (David reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , Paul Van Els [ctb] , Raphael Scherrer [ctb] , Yacine B. Chehida [ctb] , Jana Riederer [ctb]


Documentation:   PDF Manual  


GPL-3 | file LICENSE license


Imports ape, geiger, seqinr, stringr, testit

Suggests spelling, devtools, knitr, ggplot2, hunspell, lintr, rmarkdown, testthat


Suggested by beastier.


See at CRAN