'BEAUti' from R

'BEAST2' (< https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.


Reference manual

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2.6.2 by Richèl J.C. Bilderbeek, 2 months ago

https://docs.ropensci.org/beautier/ (website) https://github.com/ropensci/beautier/

Report a bug at https://github.com/ropensci/beautier

Browse source code at https://github.com/cran/beautier

Authors: Richèl J.C. Bilderbeek [aut, cre] , Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , David Winter [rev] (David reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , Paul Van Els [ctb] , Raphael Scherrer [ctb] , Yacine B. Chehida [ctb] , Katharine S. Walter [ctb] , Gary Napier [ctb] , Jason Griffiths [ctb] , Thijs Janzen [ctb] , Jana Riederer [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports ape, assertive, pryr, rappdirs, seqinr, stringr, testit

Suggests spelling, devtools, knitr, ggplot2, hunspell, lintr, markdown, readr, rmarkdown, testthat

Imported by beastier.

Suggested by mauricer.

See at CRAN