Generalized UniFrac Distances and Distance-Based Multivariate Analysis of Variance

Implementation of generalized UniFrac distances for comparing microbial communities and three extensions to the PERMANOVA procedure. The three extensions are: (1) PERMANOVA using the Freedman-Lane permutation scheme; (2) PERMANOVA omnibus test using multiple matrices; and (3) Analytical approach to approximating PERMANOVA p-value.


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install.packages("GUniFrac")

1.2 by Jun Chen, 5 days ago


Browse source code at https://github.com/cran/GUniFrac


Authors: Jun Chen


Documentation:   PDF Manual  


Task views: Phylogenetics, Especially Comparative Methods


GPL-3 license


Depends on matrixStats, Matrix, vegan, ape, parallel, stats, utils

Suggests ade4


Imported by MiRKAT.

Suggested by microeco.


See at CRAN