Tracer from R

'BEAST2' (< http://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'Tracer' (< http://tree.bio.ed.ac.uk/software/tracer/>) is a GUI tool to parse and analyze the files generated by 'BEAST2'. This package provides a way to parse and analyze 'BEAST2' input files without active user input, but using R function calls instead.


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Reference manual

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install.packages("tracerer")

2.0.2 by Richèl J.C. Bilderbeek, 4 months ago


https://github.com/ropensci/tracerer


Report a bug at https://github.com/ropensci/tracerer


Browse source code at https://github.com/cran/tracerer


Authors: Richèl J.C. Bilderbeek [aut, cre] , Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , David Winter [rev] (David reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209)


Documentation:   PDF Manual  


GPL-3 license


Imports jsonlite, Rcpp, testit

Suggests ape, geiger, ggplot2, hunspell, knitr, phangorn, rbenchmark, reshape2, rmarkdown, spelling, stringr, testthat

Linking to Rcpp


Depended on by babette.

Suggested by beastier.


See at CRAN