Tracer from R

'BEAST2' (< http://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'Tracer' (< http://tree.bio.ed.ac.uk/software/tracer/>) is a GUI tool to parse and analyze the files generated by 'BEAST2'. This package provides a way to parse and analyze 'BEAST2' input files without active user input, but using R function calls instead.


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Reference manual

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install.packages("tracerer")

2.0.1 by Richèl J.C. Bilderbeek, 6 months ago


https://github.com/ropensci/tracerer


Report a bug at https://github.com/ropensci/tracerer


Browse source code at https://github.com/cran/tracerer


Authors: Richèl J.C. Bilderbeek [aut, cre] , Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209) , David Winter [rev] (David reviewed the package for rOpenSci , see https://github.com/ropensci/onboarding/issues/209)


Documentation:   PDF Manual  


GPL-3 | file LICENSE license


Imports jsonlite, Rcpp, testit

Suggests ape, geiger, ggplot2, hunspell, knitr, phangorn, rbenchmark, reshape2, rmarkdown, spelling, stringr, testthat

Linking to Rcpp


Suggested by beastier.


See at CRAN