Distances Between Phylogenetic Trees

Implements measures of tree similarity, including information-based generalized Robinson-Foulds distances (Phylogenetic Information Distance, Clustering Information Distance, Matching Split Information Distance; Smith, 2020) ; Jaccard-Robinson-Foulds distances (Bocker et al. 2013) , including the Nye et al. (2006) metric ; the Matching Split Distance (Bogdanowicz & Giaro 2012) ; Maximum Agreement Subtree distances; the Kendall-Colijn (2016) distance , and the Nearest Neighbour Interchange (NNI) distance, approximated per Li et al. (1996) . Calculates the median of a set of trees under any distance metric.


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install.packages("TreeDist")

1.0.0 by Martin R. Smith, 7 days ago


https://ms609.github.io/TreeDist, https://github.com/ms609/TreeDist


Report a bug at https://github.com/ms609/TreeDist/issues


Browse source code at https://github.com/cran/TreeDist


Authors: Martin R. Smith [aut, cre, cph, prg] , Roy Jonker [prg, cph] , Yong Yang [ctb, cph] , Yi Cao [ctb, cph]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports ape, colorspace, memoise, phangorn, TreeTools

Depends on stats

Suggests bookdown, cluster, kdensity, knitr, MASS, Quartet, rmarkdown, Rcpp, Rdpack, testthat, Ternary, TreeDistData, TreeSearch, vdiffr

Linking to Rcpp


Imported by TBRDist.


See at CRAN