Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees

Provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.


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Reference manual

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install.packages("BAMMtools")

2.1.6 by Pascal Title, 2 years ago


http://www.bamm-project.org


Browse source code at https://github.com/cran/BAMMtools


Authors: Dan Rabosky , Mike Grundler , Pascal Title , Carlos Anderson , Jeff Shi , Joseph Brown , Huateng Huang , Jon Mitchell


Documentation:   PDF Manual  


Task views: Phylogenetics, Especially Comparative Methods


GPL (>= 2) license


Imports Rcpp, gplots, methods

Depends on ape

Suggests parallel


Imported by EloOptimized, GD.

Suggested by binst.


See at CRAN