Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees

Provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.


Reference manual

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2.1.8 by Pascal Title, 8 days ago

Browse source code at

Authors: Dan Rabosky , Mike Grundler , Pascal Title , Carlos Anderson , Jeff Shi , Joseph Brown , Huateng Huang , Jon Mitchell

Documentation:   PDF Manual  

Task views: Phylogenetics, Especially Comparative Methods

GPL (>= 2) license

Imports Rcpp, gplots, methods

Depends on ape

Suggests parallel

Imported by EloOptimized.

Suggested by binst.

See at CRAN