A Tidy Tool for Phylogenetic Tree Data Manipulation

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. ‘tidytree’ provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Author

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

https://guangchuangyu.github.io

Installation

Get the released version from CRAN:

install.packages("tidytree")

Or the development version from github:

## install.packages("devtools")
devtools::install_github("GuangchuangYu/tidytree")

News

tidytree 0.2.4

call child.tbl_tree instead of child in offspring, (2019-02-26, Tue) so that it works more robust for data.frame.

tidytree 0.2.3

more parameter for offspring (2019-01-28, Mon)

tidytree 0.2.2

mv vignette to treedata-book (2019-01-10, Thu)

tidytree 0.2.1

mutate.tbl_tree method (2018-12-19, Wed)
- https://github.com/GuangchuangYu/tidytree/issues/7
bug fixed in child
- https://github.com/GuangchuangYu/tidytree/pull/8

tidytree 0.2.0

compatible with tibble v = 2.0.0 (2018-11-29, Thu)
- change as_data_frame method to as_tibble since as_data_frame was deprecated in tibble and not exported as generics