Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. ‘tidytree’ provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Guangchuang YU
School of Basic Medical Sciences, Southern Medical University
https://guangchuangyu.github.io
Get the released version from CRAN:
install.packages("tidytree")
Or the development version from github:
## install.packages("devtools")devtools::install_github("GuangchuangYu/tidytree")
child.tbl_tree
instead of child
in offspring
, (2019-02-26, Tue)
so that it works more robust for data.frame
.offspring
(2019-01-28, Mon)mutate.tbl_tree
method (2018-12-19, Wed)
child
tibble
v = 2.0.0 (2018-11-29, Thu)
as_data_frame
method to as_tibble
since as_data_frame
was deprecated in tibble
and not exported as genericsas_data_frame.phylo
works with phylo$root.edge
(2018-06-13, Wed)get_tree_data(treedata)$node
to be integer (2018-04-19, Thu)get.data
, [
and [[
methods (2018-02-26, Mon)