Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.


Reference manual

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3.1.3 by Adam H. Sparks, 3 months ago,

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Authors: Austin G. McCoy [aut, ccp] , Zachary Noel [aut, ccp] , Adam H. Sparks [aut, cre] , Martin Chilvers [aut, ths] , Zhian N. Kamvar [ctb, rev] , Michigan Soybean Promotion Committee [fnd] , Project GREEEN [fnd] , North Central Soybean Research Program [fnd] , GRDC Project DAQ00186 [fnd]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports data.table, ggplot2, pander, stats, utils

Suggests ape, dplyr, knitr, rmarkdown, testthat, vegan, vdiffr

See at CRAN