Iterative Extrapolation of Species' Haplotype Accumulation Curves for Genetic Diversity Assessment

Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) , Phillips et al. (2019) and Phillips et al. (2020) . Any genomic marker can be targeted to assess likely required specimen sample sizes. The method is well-suited to assess sampling sufficiency for DNA barcoding initiatives.


Reference manual

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1.0.5 by Jarrett D. Phillips, a year ago

Browse source code at

Authors: Jarrett D. Phillips [aut, cre] , Steven H. French [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports ape, graphics, pegas, Rcpp, stats, utils

Linking to Rcpp, RcppArmadillo

See at CRAN