Iterative Extrapolation of Species' Haplotype Accumulation Curves

Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) and Phillips et al. (2019) . Any genomic marker can be targeted to assess likely required specimen sample sizes. The method is well-suited to assess sampling sufficiency for DNA barcoding initiatives.


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install.packages("HACSim")

1.0.2 by Jarrett D. Phillips, 21 days ago


Browse source code at https://github.com/cran/HACSim


Authors: Jarrett D. Phillips [aut, cre] , Steven H. French [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports ape, graphics, pegas, Rcpp, stats, utils

Linking to Rcpp, RcppArmadillo


See at CRAN