Variable, Diversity and Joining Sequences from Various Species

Contains variable, diversity, and joining sequences and accompanying functions that enable both the extraction of and comparison between immune V-D-J genomic segments from a variety of species. Sources include IMGT from MP Lefranc (2009) and Vgenerepertoire from publication DN Olivieri (2014) .


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Reference manual

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install.packages("VDJgermlines")

0.1 by Alexander Yermanos, 2 months ago


Browse source code at https://github.com/cran/VDJgermlines


Authors: Alexander Yermanos


Documentation:   PDF Manual  


GPL-2 license


Depends on ape, stringdist

Suggests knitr, rmarkdown


See at CRAN