Estimate Kinship and FST under Arbitrary Population Structure
Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <10.1101>.10.1101>
2017-09-11 - popkin 220.127.116.1100
2017-11-21 - popkin 18.104.22.16800
- Fix a bug in which genotypes input to popkin via a function (rather than a regular matrix or a BEDMatrix object) caused popkin to die. Now popkin behaves as expected. New test unit cases were added to test function inputs (previously this case was untested).
2017-11-24 - popkin 22.214.171.12400
- Added option to set colors for the lines that separate subpopulations.
2018-01-08 - popkin 1.0.3
- Minor non-code changes for first CRAN submission.
2018-01-13 - popkin 1.0.4
2018-01-26 - popkin 1.0.5
- Updated vignette code to work when suggested package "lfa" is not available (needed for CRAN tests). This change is not visible in rendered vignette included in package.