Interfaces to Phylogenetic Software in R

Functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.


Reference manual

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0.0.11 by Christoph Heibl, 2 years ago

Browse source code at

Authors: Christoph Heibl [aut, cre] , Natalie Cusimano [aut] , Franz-Sebastian Krah [aut]

Documentation:   PDF Manual  

Task views: Phylogenetics, Especially Comparative Methods

GPL-3 license

Imports phangorn, plyr, seqinr, XML

Depends on ape

Suggested by shipunov.

See at CRAN