Rearrangement Distances Between Unrooted Phylogenetic Trees

Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) .


Reference manual

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1.0.2 by Martin R. Smith, 4 months ago,,

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Authors: Martin R. Smith [aut, cre, cph] , Chris Whidden [cph]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports ape, Rdpack, TreeDist, TreeTools

Suggests knitr, rmarkdown, testthat

Linking to BH, Rcpp

System requirements: C++11

See at CRAN