AnnotationBustR

Extract Subsequences from GenBank Annotations

Extraction of subsequences into FASTA files from GenBank annotations where gene names may vary among accessions.

News

AnnotationBustR 1.1

NEW FEATURES

  • mtDNAtermsPlants search terms for plant mitochondrial DNA.
  • Better support for intron/exon sequence extraction.
  • More in depth vignette covering how to find and obtain sequences as well as how to extract introns/exons.

UPDATED FEATURES

  • Substantial changes to both mtDNAterms and cpDNAterms adding 50+ terms to each.

Reference manual

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install.packages("AnnotationBustR")

1.2 by Samuel R. Borstein, 10 months ago

https://github.com/sborstein/AnnotationBustR, https://www.ncbi.nlm.nih.gov/nuccore, https://en.wikipedia.org/wiki/FASTA_format

Report a bug at https://github.com/sborstein/AnnotationBustR/issues

Browse source code at https://github.com/cran/AnnotationBustR

Authors: Samuel R. Borstein <[email protected]> , Brian O'Meara <[email protected]>

Documentation:   PDF Manual  

GPL (>= 2) license

Imports ape, seqinr

Suggests knitr, rmarkdown, testthat

See at CRAN

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