AnnotationBustR

Extract Subsequences from GenBank Annotations

Extraction of subsequences into FASTA files from GenBank annotations where gene names may vary among accessions. Borstein & O'Meara (2018) .

News

AnnotationBustR 1.1

NEW FEATURES

  • mtDNAtermsPlants search terms for plant mitochondrial DNA.
  • Better support for intron/exon sequence extraction.
  • More in depth vignette covering how to find and obtain sequences as well as how to extract introns/exons.

UPDATED FEATURES

  • Substantial changes to both mtDNAterms and cpDNAterms adding 50+ terms to each.

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.
install.packages("AnnotationBustR")

1.3.0 by Samuel R. Borstein, a month ago

https://github.com/sborstein/AnnotationBustR, https://www.ncbi.nlm.nih.gov/nuccore, https://peerj.com/articles/5179/

Report a bug at https://github.com/sborstein/AnnotationBustR/issues

Browse source code at https://github.com/cran/AnnotationBustR

Authors: Samuel R. Borstein <[email protected]> , Brian O'Meara <[email protected]>

Documentation:   PDF Manual  

GPL (>= 2) license

Imports ape, seqinr

Suggests knitr, rmarkdown, testthat

See at CRAN

R links

R homepage

Download R

Mailing lists

R documentation

R manuals

R FAQs

The R Journal

CRAN links

CRAN homepage

CRAN repository policy

Submit a package

METACRAN stuff

About METACRAN

At github

Report a bug