Searching for Footprints of Selection using Haplotype Homozygosity Based Tests

Functions for the detection of footprints of selection on dense SNP data using Extended Homozygosity Haplotype (EHH) based tests. The package includes computation of EHH, iHS (within population) and Rsb or XP-EHH (across pairs of populations) statistics. Various plotting functions are also included to facilitate visualization and interpretation of the results.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("rehh")

2.0.2 by Mathieu Gautier, 3 months ago


Browse source code at https://github.com/cran/rehh


Authors: Mathieu Gautier, Alexander Klassmann and Renaud Vitalis


Documentation:   PDF Manual  


GPL (>= 2) license


Depends on rehh.data, gplots, methods

Suggests knitr, rmarkdown


Imported by coala.


See at CRAN