Searching for Footprints of Selection using Haplotype Homozygosity Based Tests

Functions for the detection of footprints of selection on dense SNP data using Extended Homozygosity Haplotype (EHH) based tests. The package includes computation of EHH, iHS (within population) and Rsb or XP-EHH (across pairs of populations) statistics. Various plotting functions are also included to facilitate visualization and interpretation of the results.


Reference manual

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2.0.2 by Mathieu Gautier, 2 years ago

Browse source code at

Authors: Mathieu Gautier, Alexander Klassmann and Renaud Vitalis

Documentation:   PDF Manual  

GPL (>= 2) license

Depends on, gplots, methods

Suggests knitr, rmarkdown

Imported by coala.

See at CRAN