Minicircle Sequence Cluster (MSC) Analyses

It establishes a critical framework to manipulate, explore and extract biologically relevant information from mitochondrial minicircle assemblies in tens to hundreds of samples simultaneously and efficiently. This should facilitate research that aims to develop new molecular markers for identifying species-specific minicircles, or to study the ancestry of parasites for complementary insights into their evolutionary history.


Reference manual

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1.1 by Manon Geerts, 6 months ago

Browse source code at

Authors: Frederik Van den Broeck [aut] , Manon Geerts [aut, cre]

Documentation:   PDF Manual  

GPL license

Imports ggplot2, ape, circlize, ComplexHeatmap, reshape2, utils, stats, dplyr, factoextra, FactoMineR, ggpubr, magrittr, stringr

Suggests viridis

See at CRAN