Procrustes Application to Cophylogenetic Analysis

Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.


Build Status Coverage Status DOI

This package implements the functions neeeded to perform PACo (Balbuena et al. 2013) in R.

Balbuena, Juan Antonio, Raúl Míguez-Lozano, and Isabel Blasco-Costa. “PACo: A Novel Procrustes Application to Cophylogenetic Analysis.” PLoS ONE 8, no. 4 (2013): e61048. doi:10.1371/journal.pone.0061048.

How to use

Have a look at the manual, ?PACo has a full example.

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Reference manual

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install.packages("paco")

0.3.2 by Matthew Hutchinson, 2 years ago


http://www.uv.es/cophylpaco/


Browse source code at https://github.com/cran/paco


Authors: Juan Antonio Balbuena <[email protected]> , Timothee Poisot <[email protected]> , Matthew Hutchinson <[email protected]> , Fernando Cagua <[email protected]>


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports vegan, plyr

Suggests ape, testthat


Suggested by aptg.


See at CRAN