Procrustes Application to Cophylogenetic Analysis

Procrustes analyses to infer co-phylogenetic matching between pairs of phylogenetic trees.

PACo

This package implements the functions neeeded to perform PACo (Balbuena et al. 2013) in R.

Balbuena, Juan Antonio, Raúl Míguez-Lozano, and Isabel Blasco-Costa. “PACo: A Novel Procrustes Application to Cophylogenetic Analysis.” PLoS ONE 8, no. 4 (2013): e61048. doi:10.1371/journal.pone.0061048.

How to use

Have a look at the manual, ?PACo has a full example. Note that the paco_links function returns the bias-corrected jackknife estimates of each interaction's residual rather than the mean and confidence intervals of jackknife runs.