Procrustes Application to Cophylogenetic Analysis

Procrustes analyses to infer co-phylogenetic matching between pairs of phylogenetic trees.

Build Status Coverage Status DOI

This package implements the functions neeeded to perform PACo (Balbuena et al. 2013) in R.

Balbuena, Juan Antonio, Raúl Míguez-Lozano, and Isabel Blasco-Costa. “PACo: A Novel Procrustes Application to Cophylogenetic Analysis.” PLoS ONE 8, no. 4 (2013): e61048. doi:10.1371/journal.pone.0061048.

How to use

Have a look at the manual, ?PACo has a full example.


Reference manual

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0.4.2 by Matthew Hutchinson, a year ago

Browse source code at

Authors: Juan Antonio Balbuena <[email protected]> , Timothee Poisot <[email protected]> , Matthew Hutchinson <[email protected]> , Fernando Cagua <[email protected]>; see PLoS ONE Balbuena et al 2013 <>

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports vegan, ape, plyr

Suggests testthat

See at CRAN