Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree

Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.


Reference manual

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install.packages("Apoderoides")

3.0.1 by Satoshi Aoki, a year ago


https://github.com/Sa-to-shi-A-o-ki/Apoderoides


Report a bug at https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues


Browse source code at https://github.com/cran/Apoderoides


Authors: Satoshi Aoki [aut, cph, cre] , Keita Fukasawa [ctb]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports ape, Rcpp, RcppProgress

Suggests knitr, rmarkdown

Linking to Rcpp, RcppProgress


See at CRAN