Detect Population Structure Within Phylogenetic Trees

Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns. The methods are described in Volz, E., Wiuf, C., Grad, Y., Frost, S., Dennis, A., & Didelot, X. (2020) .


Reference manual

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0.1.0 by Erik Volz, a year ago

Browse source code at

Authors: Erik Volz

Documentation:   PDF Manual  

GPL (>= 2) license

Imports ape

Suggests ggtree, ggplot2, knitr

Linking to Rcpp

See at CRAN