Exploratory Analyses for the Phylogenetic Comparative Method

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) .


Reference manual

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install.packages("adephylo")

1.1-17 by Aurélie Siberchicot, 2 years ago


https://github.com/adeverse/adephylo


Report a bug at https://github.com/adeverse/adephylo/issues


Browse source code at https://github.com/cran/adephylo


Authors: Stéphane Dray [aut] , Thibaut Jombart [aut] , Anders Ellern Bilgrau [ctb] , Aurélie Siberchicot [ctb, cre]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports phylobase, ape, adegenet

Depends on methods, ade4


Imported by adespatial, phylosignal.

Suggested by ade4, phylosem, treestats.


See at CRAN