Estimation and Tests of Hierarchical F-Statistics

Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution(1998), 52:950). Tests via randomisations the significance of each F and variance components, using the likelihood-ratio statistics G (Goudet et al. (1996) < https://www.genetics.org/content/144/4/1933>). Estimates genetic diversity statistics for haploid and diploid genetic datasets in various formats, including inbreeding and coancestry coefficients, and population specific F-statistics following Weir and Goudet (2017) < https://www.genetics.org/content/206/4/2085>.


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install.packages("hierfstat")

0.5-7 by Jerome Goudet, 3 months ago


https://www.r-project.org, https://github.com/jgx65/hierfstat


Report a bug at https://github.com/jgx65/hierfstat/issues


Browse source code at https://github.com/cran/hierfstat


Authors: Jerome Goudet [aut, cre] , Thibaut Jombart [aut] , Zhian N. Kamvar [ctb] , Eric Archer [ctb] , Olivier Hardy [ctb]


Documentation:   PDF Manual  


Task views: Statistical Genetics


GPL (>= 2) license


Imports ade4, adegenet, gaston, gtools, methods

Suggests ape, pegas, knitr, rmarkdown, testthat


Imported by HierDpart, dartR.

Suggested by EcoGenetics, adegenet.


See at CRAN