Control 'BEAST2'

'BEAST2' (< https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.


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Reference manual

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install.packages("babette")

2.1.2 by Richèl J.C. Bilderbeek, 2 months ago


Browse source code at https://github.com/cran/babette


Authors: Richèl J.C. Bilderbeek [aut, cre] , Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci , see https://github.com/richelbilderbeek/onboarding/issues/209) , David Winter [rev] (David reviewed the package for rOpenSci , see https://github.com/richelbilderbeek/onboarding/issues/209) , Giovanni Laudanno [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports phangorn, remotes, stringr, testit, xml2

Depends on beautier, beastier, mauricer, tracerer

Suggests ape, ggplot2, hunspell, knitr, lintr, nLTT, rappdirs, rmarkdown, spelling, testthat

System requirements: BEAST2 (https://www.beast2.org/)


See at CRAN