Handling taxonomic lists through objects of class 'taxlist'. This package provides functions to import species lists from 'Turboveg' (< https://www.synbiosys.alterra.nl/turboveg>) and the possibility to create backups from resulting R-objects. Also quick displays are implemented as summary-methods.
count_taxa()
style="knitr"
for function print_name()
(See this issue) at Stack Overflow.backup_object()
, the message will be done after successful saving and not before.accepted_only
in function match_names()
, for comparing strings only with accepted names.x
at function match_names()
add_synonym()
was not properly working for incomplete entries (missing variables in the replacement values.)load_last()
was not properly working for values of file
without mention of subfolder.accepted_name()
with option show_traits=TRUE
was not displaying taxa with no entries for taxon traits.taxlist
wrongly included a slot hierarchy.replace_view
.print_name
for formatting taxon names to italic style.update_name
, for updating information in slot taxonNames
.synonyms
retrieving synonyms for indicated concepts.delete_name
for deleting synonyms in taxlist
objects.basionym
for handling basionyms.accepted_name
retrieves also information on Level
(taxonomic rank) and traits (optional in argument show_traits
).summary
for single taxon is displaying the name of the parent taxon (accepted name) and optional a string for the taxon view.backup_object
prints a message in the console.Easplist
adapted to new state of database SWEA-Dataveg.match_names
counts multiple best matchings and includes a new argument show_concepts
for displaying the respective accepted names and taxon concept ID.load_last
was not working for single files with suffix, neither for absolute path or paths with underscores.summary
for single taxa was not displaying names that are homonyms to the accepted name.load_last
to load last backup in an R-session.dissect_name
for splitting names into their parts.match_names
matching character vectors with names of a taxlist
object.backup_object
is also working with relative paths.add_view
was not adding new columns in the respective slot.tv2taxlist
does not modify slot taxonViews
in prototype.load_last
was not working with values of filename
having underscores.add_trait
.tax2traits
.level
inserted in function merge_taxa
.clean
also set keys to class integer
.add_concept
: wrong assignment of AcceptedName
.merge_taxa
.ConceptID
in summary
(taxlis-method
) can be a character vector matching TaxonName
.taxlist-intro
.vegdata
moved from Depends to Imports.df2taxlist
adapted to species lists with duplicated names.keep_parents
and keep_children
implemented in function subset
.as.list
.TaxonName
and AuthorName
not allowed in slot taxonNames
.