Comparative Analysis with Annotation-Based Genomic Components

A first-principle, phylogeny-aware comparative genomics tool for investigating associations between terms used to annotate genomic components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative or rank variables such as number of cell types, genome size, or density of specific genomic elements. See the project website for more information, documentation and examples.


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Reference manual

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install.packages("CALANGO")

1.0.2 by Felipe Campelo, a month ago


https://fcampelo.github.io/CALANGO/


Report a bug at https://github.com/fcampelo/CALANGO/issues/


Browse source code at https://github.com/cran/CALANGO


Authors: Francisco Lobo [aut] , Felipe Campelo [aut, cre] , Jorge Augusto Hongo [aut] , Giovanni Marques de Castro [aut] , Gabriel Almeida [sad, dnc]


Documentation:   PDF Manual  


GPL-2 license


Imports assertthat, pbmcapply, ape, rmarkdown, nlme, BiocManager, taxize, dendextend, heatmaply, ggplot2, plotly, DT, htmltools, htmlwidgets, pkgdown, knitr

Suggests AnnotationDbi, KEGGREST, GO.db


See at CRAN