Reference manual

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install.packages("lme4")

1.1-38 by Ben Bolker, 6 days ago


https://github.com/lme4/lme4/


Report a bug at https://github.com/lme4/lme4/issues


Browse source code at https://github.com/cran/lme4


Authors: Douglas Bates [aut] , Martin Maechler [aut] , Ben Bolker [aut, cre] , Steven Walker [aut] , Rune Haubo Bojesen Christensen [ctb] (ORCID: , Henrik Singmann [ctb] , Bin Dai [ctb] , Fabian Scheipl [ctb] , Gabor Grothendieck [ctb] , Peter Green [ctb] , John Fox [ctb] , Alexander Bauer [ctb] , Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula) , Emi Tanaka [ctb] , Mikael Jagan [ctb] , Ross D. Boylan [ctb] , Anna Ly [ctb]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports graphics, grid, splines, utils, parallel, MASS, lattice, boot, nlme, minqa, nloptr, reformulas, rlang, Rdpack

Depends on Matrix, methods, stats

Suggests knitr, rmarkdown, MEMSS, testthat, ggplot2, mlmRev, optimx, gamm4, pbkrtest, HSAUR3, numDeriv, car, dfoptim, mgcv, statmod, rr2, semEff, tibble, merDeriv

Enhances DHARMa, performance

Linking to Rcpp, RcppEigen, Matrix


Imported by ARTool, AgroR, AssumpSure, BCClong, BFpack, BayesCACE, BayesLN, BayesSenMC, BradleyTerry2, CIMPLE, CMatching, CR2, CRTspat, CleaningValidation, ComBatFamQC, CompositeReliability, DClusterm, DHARMa, EQUALSTATS, ESTER, EdSurvey, EstimateBreed, GLMMcosinor, GLMpack, GRAB, HDANOVA, IDmeasurer, IMTest, INLAjoint, INSPECTumours, JWileymisc, KenSyn, LEGIT, LKT, LSAmitR, LongDat, MAGNAMWAR, MCM, MDMA, MECfda, MF.beta4, MIGEE, MLID, MLMusingR, MMeM, MRStdCRT, MariNET, MedianaDesigner, MethodCompare, MiRKAT, MixedPsy, PBImisc, PLmixed, PSweight, PUMP, PheVis, Phenotype, PoolTestR, REndo, RLRsim, RRreg, RStanTVA, RVAideMemoire, Rcmdr, RcmdrPlugin.TeachStat, SIAmodules, ShinyItemAnalysis, SignacX, SimplyAgree, SoyNAM, SumcaVer1, Surrogate, TcGSA, VAJointSurv, VCA, VetResearchLMM, ZLAvian, abn, actuaRE, agriutilities, altmeta, attrib, autoMrP, bayesammi, baystability, bin2norm, blmeco, boot.pval, breakaway, brokenstick, buildmer, car, catalytic, ceas, cgam, chngpt, ciTools, cito, climwin, clinicalsignificance, clintools, clustTMB, cobin, compositeReliabilityInNestedDesigns, confintROB, conversim, cpr, crctStepdown, cv, cvms, dataquieR, daySupply, designr, diagmeta, difR, distfreereg, dmlalg, doremi, dplR, dsBase, eatRep, eefAnalytics, effects, epr, epts, evolvability, ez, faraway, fastFMM, faux, fence, finalfit, fishmethods, fullfact, galamm, gammi, geeasy, geex, gemR, glm.predict, glmm.hp, glmmEP, glmmSeq, glmmTMB, grafify, gvcR, iSTAY, ib, iccbeta, iccmult, inferference, intRvals, inti, isni, jlmerclusterperm, joineRML, jomo, jstable, konfound, lefko3, likelihoodR, longsurr, manymodelr, mecor, mediation, meta, metadeconfoundR, metamicrobiomeR, metamisc, metan, metaplus, micemd, misty, mixedbiastest, mlVAR, mlmhelpr, mlmpower, mlmtools, modnets, mult.latent.reg, multiDimBio, multid, multilevelTools, multilevelmod, multisite.accuracy, multitool, multpois, mxnorm, netmediate, pamm, partR2, pastaPlot, pcgen, pcvr, pdR, peramo, petersenlab, phoenics, phyr, piecewiseSEM, plgraphics, powerbydesign, pprof, projpred, psc, psfmi, psme, ptmixed, pwlmm, qape, qra, quest, rADA, raincin, readyomics, refund, refund.shiny, reghelper, regplot, repmod, reproducer, rewie, rockchalk, rpql, rptR, rqlm, rr2, rsq, rstanarm, saeczi, samplr, sdmTMB, semEff, siland, skpr, smicd, spAbundance, spOccupancy, specr, splithalf, spsurvey, squid, stabiliser, stability, standardize, statgenGxE, statgenSTA, steppedwedge, stevemisc, surrosurv, svycoxme, svylme, swCRTdesign, swaprinc, toscca, trace, trouBBlme4SolveR, tukeytrend, varTestnlme, vglmer, vibass, warpMix, weights, welchADF.

Depended on by BClustLonG, CLME, GLMMRR, LMERConvenienceFunctions, MDMR, MEMSS, MIIPW, MixRF, MultisiteMediation, QualityMeasure, SPCDAnalyze, WeMix, WebPower, afex, agRee, arm, bapred, blme, cAIC4, carcass, eirm, gamm4, glmertree, glmmPen, influence.ME, lme4GS, lme4breeding, lmerTest, longpower, marked, merDeriv, merTools, mermboost, mixAK, mlmRev, mlma, mvMISE, panelr, pbkrtest, pedigreemm, predictmeans, predint, r2mlm, robustBLME, robustlmm, sae, simr, structree, vcPB.

Suggested by AICcmodavg, ANOM, AgreementInterval, BGData, BayesFactor, DAAG, EgoCor, Epi, FBMS, FRK, HLMdiag, HSAUR, HSAUR2, HSAUR3, HelpersMG, ICCbin, ILSAstats, KFAS, LMMstar, MARSS, MESS, MethComp, MuMIn, NHSRdatasets, OlinkAnalyze, OnAge, OpenMx, R2admb, RESI, RcmdrPlugin.NMBU, RoBMA, SARP.compo, SASmixed, ScottKnott, SimSurvey, SpaDES.core, SynergyLMM, TripleR, TukeyC, VizTest, ZIBR, agridat, aod, aods3, asympDiag, autoReg, bartCause, bayestestR, bregr, brms, brolgar, broom, broom.helpers, broom.mixed, bruceR, cardx, catdata, catregs, clubSandwich, cocoon, connected, correlation, corrselect, ctsem, datawizard, dlnm, doBy, dominanceanalysis, domir, dscore, easyViz, ecostats, effectsize, embed, emmeans, epimdr, equatiomatic, eyetrackingR, finetune, flexmix, flextable, gamair, ggResidpanel, ggeffects, gglm, ggstatsplot, glmmML, glmmsel, glmulti, gmodels, gratia, gtsummary, hamlet, hmclearn, hnp, huxtable, injurytools, insight, interactions, ipmr, irtrees, jointest, jtools, kerasnip, kyotil, languageR, latrend, lava, lavaSearch2, likelihoodAsy, lmeInfo, lmeresampler, lmfor, longmixr, lucid, lvmisc, marginaleffects, margins, matrixset, mbest, metadat, metafor, mice, miceadds, mitml, mixlm, mlpwr, mlr3fda, mlr3pipelines, mmrm, modelbased, modelsummary, mrIML, mrap, multcomp, multilevelcoda, ordinal, pan, papaja, parameters, pda, performance, permutes, pez, phia, polypoly, postHoc, psych, purge, r2glmm, rdss, reformulas, report, rfars, rmcorr, rtables, samplingDataCRT, sandwich, scicomptools, see, sense, shinybrms, simglm, singcar, sjPlot, sjstats, sjtable2df, sleev, slim, spaMM, stan4bart, statlingua, supernova, tableone, tidyLPA, tidyfit, tidytreatment, tram, tramME, unvs.med, visreg.

Enhanced by LAM, biometryassist, immer, memisc, papeR, prediction, stargazer, texreg.


See at CRAN