Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
2.0-6 by Ben Bolker, 3 months ago
Report a bug at https://github.com/lme4/lme4/issues
Browse source code at https://github.com/cran/lme4
Authors: Douglas Bates [aut] , Martin Maechler [aut] , Ben Bolker [cre, aut] , Steven Walker [aut] , Anna Ly [aut] , Mikael Jagan [aut] , Rune Haubo Bojesen Christensen [ctb] (ORCID: , Henrik Singmann [ctb] , Bin Dai [ctb] , Fabian Scheipl [ctb] , Gabor Grothendieck [ctb] , Peter Green [ctb] , John Fox [ctb] , Alexander Bauer [ctb] , Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula) , Emi Tanaka [ctb] , Ross D. Boylan [ctb] , Henrik Bengtsson [ctb]
Documentation:
PDF Manual
GPL (>= 2) license
Imports MASS, Rdpack, boot, graphics, grid, lattice, minqa, nlme, nloptr, parallel, reformulas, splines, utils
Depends on Matrix, methods, stats
Suggests DHARMa, HSAUR3, MEMSS, car, dfoptim, future.apply, gamm4, ggplot2, glmmTMB, gridExtra, knitr, merDeriv, mgcv, mlmRev, numDeriv, optimx, pbkrtest, performance, rmarkdown, rr2, see, semEff, statmod, testthat, tibble
Linking to Matrix, Rcpp, RcppEigen
Imported by ALDEx3, ARTool, AgroR, ArvindSt, AssumpSure, BCClong, BFpack, BayesCACE, BayesLN, BayesSenMC, CEDMr, CMatching, CR2, CRTspat, CalibrationCurves, CleaningValidation, ComBatFamQC, CompositeReliability, DClusterm, DHARMa, EQUALSTATS, EdSurvey, EstimateBreed, FESta, GLMpack, GRAB, GimmeMyStats, HDANOVA, IDmeasurer, IMTest, JWileymisc, LEGIT, LKT, LSAmitR, LongDat, MAGNAMWAR, MAIHDA, MCM, MDMA, MECfda, MF.beta4, MIGEE, MLID, MLMES, MLMusingR, MMeM, MRStdCRT, MRStdLCRT, MXM, MariNET, MedianaDesigner, MethodCompare, MiRKAT, MixedPsy, MultiSpline, PBImisc, PLmixed, PStrata, PSweight, PUMP, PheVis, Phenotype, PoolTestR, PowRPriori, REndo, RLRsim, RMeDPower2, RRPP, RRreg, RStanTVA, RVAideMemoire, Rcmdr, RcmdrPlugin.TeachStat, SBMTrees, SIAmodules, SRMERS, ShinyItemAnalysis, SignacX, SimplyAgree, SoyNAM, SumcaVer1, Surrogate, TcGSA, VCA, WeightedCluster, ZLAvian, abn, achieveGap, actuaRE, agriReg, agriutilities, altmeta, attrib, bayesammi, baystability, beezdemand, bin2norm, blmeco, boot.pval, bootmlm, bqmm, breakaway, brokenstick, buildmer, car, catalytic, ceas, cgam, chngpt, ciTools, cito, climatehealth, climwin, clinicalsignificance, clintools, clustTMB, cobin, compositeReliabilityInNestedDesigns, confintROB, conversim, cpr, crctStepdown, ctlr, cv, cvms, dataquieR, daySupply, designr, diagmeta, dicepro, difR, discSurv, distfreereg, dplR, dsBase, eefAnalytics, effects, epr, epts, evolvability, ez, faraway, fastFMM, fastsae, faux, fence, finalfit, fishmethods, fullfact, galamm, gammi, geeasy, geex, gemR, glm.predict, glmm.hp, glmmEP, glmmSeq, glmmTMB, gorica, grafify, gvcR, hlmLab, iSTAY, ib, iccbeta, iccmult, inferference, inough, intRvals, interplot, inti, isni, jlmerclusterperm, joineRML, jomo, jstable, konfound, landmaRk, leafareaR, lefko3, likelihoodR, lmmprobe, longitree, longsurr, manymodelr, mecor, mediation, meta, metadeconfoundR, metamisc, metan, metaplus, micemd, misty, mixedbiastest, mixpower, mlVAR, mlmhelpr, mlmoderator, mlmpower, mlmtools, mlstats, modnets, mult.latent.reg, multiDimBio, multid, multilevelTools, multilevelmod, multisite.accuracy, multitool, multpois, mxnorm, nadir, netmediate, nhscancerwaits, pamm, partR2, pastaPlot, pcgen, pcvr, pecanr, pecme, peramo, petersenlab, phoenics, phyr, piecewiseSEM, plgraphics, plssem, powerbydesign, pprof, prLogistic, projpred, psc, psfmi, psme, ptmixed, pwlmm, qape, qbrms, qra, quest, rADA, readyomics, refund, refund.shiny, reghelper, registr, repmod, reproducer, rewie, rfriend, rockchalk, rpql, rptR, rqlm, rr2, rsq, rstanarm, rtpcr, saeczi, saeproj.multilevel, samplr, semEff, siland, simpowa, skpr, smicd, spAbundance, specr, spima, splithalf, spsurvey, squid, stabiliser, stability, standardize, statAPA, statgenGxE, statgenSTA, steppedwedge, stepwedgepower, stevemisc, surrosurv, svycoxme, svylme, swCRTdesign, swaprinc, tidyILD, toscca, trace, trouBBlme4SolveR, tukeytrend, uSDT, varTestnlme, vglmer, vibass, weights.
Depended on by CLME, GLMMRR, LMERConvenienceFunctions, MDMR, MEMSS, MIIPW, MixRF, MultisiteMediation, QualityMeasure, WeMix, WebPower, afex, agRee, arm, blme, cAIC4, carcass, eirm, gamm4, glmertree, glmmPen, influence.ME, lme4GS, lme4breeding, lmerTest, longpower, marked, merDeriv, merTools, mermboost, mixAK, mlmRev, mlma, mvMISE, panelr, pbkrtest, pedigreemm, plantmix, predictmeans, predint, r2mlm, robustlmm, sae, simr, structree, vcPB.
Suggested by AIBias, AICcmodavg, AgreementInterval, BGData, BayesFactor, BayesTools, BioThermR, DAAG, DAGassist, DMAR, EDI, EMAtools, EgoCor, Epi, FBMS, FRK, Gtheory4LLM, HLMdiag, HSAUR, HSAUR2, HSAUR3, HelpersMG, ICCbin, ILSAstats, INLAvaan, KFAS, LMMstar, MARSS, MESS, MethComp, MuMIn, MultiLevelOptimalBayes, NHSRdatasets, Nestimate, OlinkAnalyze, OnAge, OpenMx, R2admb, R4VN, RESI, RcmdrPlugin.NMBU, RoBMA, RobustLPA, RobustMediate, RougeLM, SARP.compo, SASmixed, ScottKnott, SimSurvey, SpaDES.core, SynergyLMM, ThinkingGrid, TripleR, TukeyC, VetResearchLMM, VizTest, WeightIt, ZIBR, agridat, aiEvalR, aod, aods3, asympDiag, autoReg, bartCause, bayesDiagnostics, bayestestR, bregr, brms, brolgar, broom, broom.helpers, broom.mixed, bruceR, cardx, catdata, catregs, clubSandwich, cocoon, codebook, cogmod, colleyRstats, connected, correlation, corrselect, ctsem, datawizard, depictr, dlnm, doBy, dominanceanalysis, domir, drmTMB, dsBaseClient, dscore, easyViz, ecostats, effectsize, embed, emmeans, epimdr, epimdr2, equatiomatic, eyeprocess, eyetrackingR, falsifyr, fastml, fetwfe, finetune, flexmix, flextable, foresty, futurize, gamair, ggResidpanel, ggeffects, ggextreme, ggforestplotR, ggkodom, gglm, ggstatsplot, glmmFEL, glmmML, glmmrBase, glmmsel, glmulti, gmodels, gp3tools, grassr, gratia, gtsummary, hamlet, heritable, hnp, huxtable, idiographic, imv, injurytools, insight, int3ract, interactions, intraclass, ipmr, irtrees, jmSurface, jointest, jtools, kerasnip, kyotil, languageR, latrend, lava, lavaSearch2, likelihoodAsy, lmeInfo, lmeresampler, lmfor, longmixr, lucid, lvmisc, marginaleffects, margins, matrixset, mbest, mboost, mellio, metadat, metafor, metarep, mfrmr, mice, miceadds, mitml, mixlm, mlpwr, mlr3fda, mlr3pipelines, mmrm, modelbased, modeldiagramR, modelsummary, mrIML, mrap, multcomp, multilevelcoda, multivarious, ngme2, nowcaster, orchaRd, ordinal, pan, panglm, papaja, parameters, pdR, pda, performance, permutes, pez, phia, pigauto, pilotr, polypoly, postHoc, progressify, psych, purge, r2glmm, rdss, reformulas, remstimate, remverse, report, reportRmd, rfars, rmcorr, rollout, rtables, sandwich, scicomptools, sdmTMB, searchlight, see, sense, seqwrap, shinybrms, simglm, singcar, sjPlot, sjstats, sjtable2df, sleev, slim, spaMM, spicy, sportsfeatures, stan4bart, statlingua, statwitness, summata, supernova, tableone, tidyLPA, tidycreel, tidyfun, tidystats, tidytreatment, timesift, tram, tramME, tulpa, unvs.med, valueprhr, valytics, visreg.
Enhanced by LAM, biometryassist, immer, memisc, papeR, prediction, stargazer, texreg.