Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.


Reference manual

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2.5-5 by Jari Oksanen, a month ago,

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Authors: Jari Oksanen , F. Guillaume Blanchet , Michael Friendly , Roeland Kindt , Pierre Legendre , Dan McGlinn , Peter R. Minchin , R. B. O'Hara , Gavin L. Simpson , Peter Solymos , M. Henry H. Stevens , Eduard Szoecs , Helene Wagner

Documentation:   PDF Manual  

Task views: Analysis of Ecological and Environmental Data, Multivariate Statistics, Phylogenetics, Especially Comparative Methods, Psychometric Models and Methods, Analysis of Spatial Data

GPL-2 license

Imports MASS, cluster, mgcv

Depends on permute, lattice

Suggests parallel, tcltk, knitr

Imported by Arothron, BAT, DarkDiv, Demerelate, DiversityOccupancy, GERGM, HMP, HTSSIP, HierDpart, MEclustnet, NST, PCPS, PopGenReport, ProjectionBasedClustering, RRphylo, RVAideMemoire, RaceID, SYNCSA, SigTree, SparseLPM, adegenet, adespatial, bcRep, bingat, biogeo, codyn, dartR, dispRity, dynRB, ecospat, entropart, evolqg, forams, gdm, goeveg, grapherator, lefse, mcMST, memgene, metacoder, mirt, mixKernel, mobsim, netassoc, netcom, nodiv, paco, patternize, pez, poppr, preText, rich, rioja, shapeR, sharpshootR, smartR, soundecology, spaceNet, spmoran, theseus, tnam, tspmeta, vcfR, vegclust, zetadiv, zooaRchGUI.

Depended on by BBI, BiodiversityR, CommEcol, CommunityCorrelogram, FD, FreeSortR, GUniFrac, KnowBR, MiSPU, RAM, analogue, bipartite, blender, cocorresp, collpcm, dave, easyCODA, ebimetagenomics, flowDiv, iDynoR, isopam, metacom, mpmcorrelogram, ordiBreadth, otuSummary, paleoMAS, picante, rareNMtests, recluster, simba, vegan3d.

Suggested by ALA4R, EcoGenetics, EcoIndR, GCalignR, Rraven, WeightedCluster, aptg, bcp, betapart, bipartiteD3, codep, dimRed, divDyn, eHOF, ecolottery, ecospace, enveomics.R, epiphy, exprso, idar, liayson, loe, mefa, permute, phylotools, primer, propr, raptr, sads, shipunov, spaa, taxize, themetagenomics, vegdata, vegtable, yaImpute.

See at CRAN