Clustering of Sites with Species Data

Clustering algorithm developed for use with plot inventories of species. It groups plots by subsets of diagnostic species rather than overall species composition. There is an unsupervised and a supervised mode, the latter accepting suggestions for species with greater weight and cluster medoids.


Reference manual

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install.packages("isopam")

3.7 by Sebastian Schmidtlein, 8 days ago


Browse source code at https://github.com/cran/isopam


Authors: Sebastian Schmidtlein [aut, cre] (ORCID: , Jason Collison [aut] , Robin Pfannendoerfer [aut] , Lubomir Tichy [ctb]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports vegan, cluster, fastkmedoids, future, future.apply, igraph, methods, ps, RSpectra, grDevices, graphics, stats, utils, proxy, ggplot2, tibble


See at CRAN