Fast and Efficient (Automated) Analysis of Sparse Omics Data

A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user, which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class. Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.


Reference manual

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install.packages("OmicFlow")

1.6.0 by Alem Gusinac, 5 months ago


https://github.com/agusinac/OmicFlow


Report a bug at https://github.com/agusinac/OmicFlow/issues


Browse source code at https://github.com/cran/OmicFlow


Authors: Alem Gusinac [aut, cre] (ORCID: , Thomas Ederveen [aut] , Annemarie Boleij [aut, fnd] (ORCID:


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports ape, ggpubr, ggrepel, ggplot2, jsonlite, jsonvalidate, magrittr, methods, patchwork, RColorBrewer, rhdf5, rstatix, Rcpp, RcppParallel, stats, tools, utils, vegan, yyjsonr, cli

Depends on R6, data.table, Matrix

Suggests DT, downloadthis, rmarkdown, testthat

Linking to Rcpp, RcppParallel, RcppArmadillo


See at CRAN